Marketplace
Ranked by most used. Agents connect once to Lemma and run any method here.
ASE atomistic simulation environment
Atomistic Simulation Environment for setting up, running, and analysing molecular / materials simulations.
$0.05
AnnData annotated matrices
Annotated data matrices (AnnData) as the standard container for single-cell and omics analyses.
$0.03
Ax / BoTorch Bayesian optimisation
Adaptive experimentation and Bayesian optimisation with Ax and BoTorch for scientific parameter search.
$0.10
Biopython sequence toolkit
Biopython for sequence I/O, alignments, BLAST wrappers, and common bioinformatics utilities.
$0.04
Biotite structural bioinformatics
Comprehensive Python library for sequence and structure bioinformatics (Biotite).
$0.05
Dedalus spectral PDE framework
Spectral methods for PDEs with Dedalus — ideal for fluids, waves, and high-accuracy periodic problems.
$0.08
DeepONet operator learning
Learn nonlinear operators between function spaces with DeepONet for parametric PDE surrogates.
$0.12
DeepXDE physics-informed neural nets
Solve PDEs with physics-informed neural networks (PINNs) using DeepXDE. Good when mesh generation is hard or you need a surrogate.
$0.10
Diffrax JAX differential equations
Numerical differential equation solvers in JAX with Diffrax — ODEs, SDEs, and neural DEs.
$0.08
FEniCSx / DOLFINx FEM
Next-generation FEniCS finite-element platform (DOLFINx) for PDEs on complex meshes with modern Python bindings.
$0.10
FinDiff finite-difference operators
Build finite-difference operators and solve ODEs/PDEs with findiff. Lightweight numerical differentiation toolkit.
$0.02
Firedrake automated FEM
Automated solution of variational PDEs with Firedrake — compose forms in UFL, generate high-performance code.
$0.10
Fourier Neural Operator (FNO)
Learn mesh-invariant PDE solution operators with Fourier Neural Operators. Use for surrogate modelling of parametric PDE families.
$0.15
GPyTorch Gaussian processes
Scalable Gaussian processes in PyTorch with GPyTorch for surrogate modelling and Bayesian optimisation.
$0.09
Gmsh mesh generation
3D finite-element mesh generation with Gmsh — CAD, meshing, and post-processing for PDE pipelines.
$0.05
JAX-FEM differentiable finite elements
GPU-accelerated differentiable FEM in JAX for inverse design and PDE-constrained optimisation.
$0.12
NGSolve high-order FEM
High-order finite-element methods with Netgen/NGSolve for elliptic, hyperbolic, and multiphysics PDEs.
$0.09
NLopt nonlinear optimisation
Nonlinear optimisation algorithms via NLopt for constrained and unconstrained scientific design problems.
$0.04
NVIDIA PhysicsNeMo (Modulus) SciML
Physics-informed and data-driven PDE models with NVIDIA PhysicsNeMo for industrial-scale SciML workflows.
$0.18
NumPyro probabilistic programming
JAX-based probabilistic programming with NumPyro for scalable Bayesian inference.
$0.06
OpenMM molecular dynamics
High-performance molecular dynamics with OpenMM for biomolecular and soft-matter simulation.
$0.12
Optax JAX optimisers
Gradient transformation and optimiser library for JAX — building blocks for SciML training loops.
$0.03
PETSc / petsc4py scalable solvers
Scalable linear and nonlinear solvers via PETSc and petsc4py for large scientific systems.
$0.08
Psi4 quantum chemistry
Ab initio quantum chemistry with Psi4 — HF, DFT, post-HF methods for small-to-medium molecules.
$0.14
PyMC Bayesian inference
Probabilistic programming with PyMC for Bayesian models, MCMC, and uncertainty quantification.
$0.06
RDKit cheminformatics
Open-source cheminformatics with RDKit — molecules, fingerprints, descriptors, and reaction tools.
$0.05
SUNDIALS ODE/DAE solvers
CVODE, IDA, and related SUNDIALS solvers for stiff ODEs and differential-algebraic equations.
$0.07
Scanpy single-cell analysis
Scalable single-cell RNA-seq analysis with Scanpy — QC, embedding, clustering, and marker detection.
$0.08
SfePy continuum mechanics FEM
Simple finite elements in Python for continuum mechanics, multiphysics, and structural problems.
$0.06
deal.II finite element library
C++ finite-element library deal.II for adaptive meshes, multiphysics, and large-scale PDE solvers.
$0.11
meshio mesh format I/O
Read and write dozens of mesh formats with meshio for portable scientific computing pipelines.
$0.02
py-pde continuum evolution solvers
Spectral / finite-difference evolution of continuum PDEs (diffusion, Cahn–Hilliard, reaction–diffusion).
$0.05
pymatgen materials analysis
Materials analysis toolkit (pymatgen) for structures, phase diagrams, and materials project workflows.
$0.07
scikit-fem Poisson / Laplace solvers
Finite-element Poisson and Laplace problems on unstructured meshes via scikit-fem. Use for irregular domains and rapid FEM prototyping.
$0.05
scimba PINN / SciML toolkit
Scientific machine learning toolkit for PINNs and related PDE surrogates in research workflows.
$0.07
shenfun spectral Galerkin
Spectral Galerkin methods in Python with shenfun — tensor-product bases for PDEs on simple domains.
$0.07
spectralDNS fluid solvers
High-performance spectral DNS solvers for Navier–Stokes and related fluid equations.
$0.12
torchdiffeq Neural ODEs
Continuous-depth neural ODEs and adjoint sensitivity with torchdiffeq — dynamical systems as networks.
$0.08
For AI agents
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